Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs12973104 chr19:56095799 C/T 2.26E-5 487 31.3 27.97 22.37 KM Plot
PRAD rs12978447 chr19:53127812 C/T 4.86E-6 483 30.77 31.23 26.27 KM Plot
PRAD rs12991308 chr2:241773755 C/T 2.05E-5 483 29.32 32.7 32.63 KM Plot
PRAD rs12994913 chr2:178799245 T/G 4.13E-5 494 30.77 31.93 20.48 KM Plot
PRAD rs12995165 chr2:178799367 T/C 4.13E-5 494 30.77 31.93 20.48 KM Plot
PRAD rs12995449 chr2:178792231 T/G 4.13E-5 494 30.77 31.93 20.48 KM Plot
PRAD rs12999288 chr2:114040144 G/A 3.2E-5 487 32.9 29.15 23.4 KM Plot
PRAD rs13007759 chr2:178802638 A/C 4.13E-5 494 30.77 31.93 20.48 KM Plot
PRAD rs13008170 chr2:178802817 A/T 4.24E-5 492 30.75 32.42 20.48 KM Plot
PRAD rs13008381 chr2:165618317 A/T 7.63E-7 494 30.87 31.07 20.22 KM Plot
PRAD rs13008780 chr2:178803106 A/G 4.13E-5 494 30.77 31.93 20.48 KM Plot
PRAD rs13009350 chr2:178803118 G/A 4.13E-5 494 30.77 31.93 20.48 KM Plot
PRAD rs13010116 chr2:109895266 T/C 0.00012 493 31.3 30.23 29.13 KM Plot
PRAD rs13044611 chr20:2069375 G/A 2.65E-5 483 28.87 35.13 29.68 KM Plot
PRAD rs13053204 chr22:18419005 T/C 4.55E-5 487 29.17 33.07 24 KM Plot